Question 1
The article
'The Human Disease Network' examines genes tied to diseases. These can be divided into essential genes (without them the organism cannot survive) and non-essential genes (mutations in these genes can still produce viable organisms). What kinds of proteins are non-essential genes more likely to encode?
Question 2
Continuing with the
'The Human Disease Network', answer the following. The high degree of connectivity between different types of cancer in the HDN (human disease network) occurs because
Question 3
Using a
NetLogo model of a small social network, examine the size of the giant component under 3 kinds of attack: removing the highest degree nodes, highest betweenness nodes, and highest closeness nodes. In each case, remove 25 nodes. Which approach has the greatest effect on the network connectivity?
Question 4
Read the "Connectivity and Stability" section of
Rethinking the financial network (and feel free to read the rest of the paper as well!). Which of the following explains the "robust-yet-fragile" property of connected networks?
Question 5
Skim
Stability of Ecological Communities
and the Architecture of Mutualistic
and Trophic Networks. Mutualistic networks in ecology are ones where the edges represent a mutually beneficial interaction between species, e.g. a flowering plant and its pollinator. In trophic networks, edges represent predator-prey relationships between the species. The observed ecosystems have developed to be resilient to perturbations (e.g. one species declining or going extinct). Which of the following is true?