This quiz is due Tuesday, July 15. This is a hard deadline, as the course ends!
Question 1
A particular transcript has four known exons. The start codon is in exon 2. A gene predictor only predicted three exons for this gene, however the prediction was 100% correct. How might this be explained?
Question 2
Examine the following gene prediction:
+ TSS 18574 - 8.59
+ 1 CDSf 19681 - 19900 13.56
+ 2 CDSi 22135 - 22802 39.38
+ 3 CDSl 26813 - 27016 2.49
+ PolA 27211 0.93
How many coding exons are predicted?
Question 3
Examine the following gene prediction:
+ TSS 18574 - 8.59
+ 1 CDSf 19681 - 19900 13.56
+ 2 CDSi 22135 - 22802 39.38
+ 3 CDSl 26813 - 27016 2.49
+ PolA 27211 0.93
Suppose you found out that the -35 signal of this gene’s promoter is well over 1000 bp upstream from the start codon. How is it possible that it is so far from the start codon and not 35 bases upstream from that start codon?
Question 4
In the following record:
mRNA join(766..934,1475..2153)
/product="selenoprotein"
CDS join(793..934,1475..1926)
What is the numerical location of the 5' UTR?
Question 5
A synonymous SNP in a CDS means:
Question 6
In Ensembl, what four letters are at the beginning at the Ensembl identifier for a human mRNA?
Question 7
Which is most correct regarding a paternity test but looking at the results from ONLY one of the 13 CODIS loci?
Question 8
What is the purpose of gel electrophoresis in DNA fingerprinting through VNTR?
Question 9
A gene in Ensembl has two transcripts. The shorter transcript generates a longer protein upon translation. How is this possible?
Question 10
Which best describes eukaryotic transcripts?